1) for including accents in latex file:
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{lmodern}
Then we can type the characters directly into your source file.
2) for including the comments at the side of document, a good tool is todonotes.
\usepackage{todonotes}
\begin{document}
Here is the document.
\todo[color=green!40] {Here are some comments}.
\end{document}
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